Software
GETS is primarily designed as a Linux command-line tool that can be incorporated to (usually the tail end of) an expression analysis pipeline. The Perl code and examples can be downloaded from here. Documentation can be downloaded from here.

Web-based tool
A quick guide on how to use this web-based version of GETS can be downloaded from here.

Example 1
A toy example where the matrix is already centered and gene and sample information files are ordered. Can be run without adjusting any parameters.
Matrix file
 		download
Gene information file
 		download
Sample information file
 		download
Colors file
 		download

Example 1 - matrix not centered
The same data as in Example 1 but the matrix not centered. Center must be set to TRUE.
Matrix file download
Gene information file download
Sample information file download
Colors file download

Example 1 - sample info as rows
The same data as in Example 1 but the samples are rows in the sample information file. Which format is the sample information file? must be set to rows.
Matrix file download
Gene information file download
Sample information file download
Colors file download

Example 2 - gene info not ordered
An example where the gene information file is not ordered and only a subset is present as gene names in the matrix. Is gene information data already ordered? must be set to FALSE. Otherwise, gene info data will not match the gene order in the matrix.
Matrix file download
Gene information file download
 
Example 3
This is a more complex example, extracted from experiment GSE94648 from GEO. Matrix data is not centered, and neither gene information nor sample information files are ordered. Center must be set to TRUE, Is gene information data already ordered? must be set to FALSE, Is sample information data already ordered? must be set to FALSE, and Which format is the sample information file? must be set to rows.
Matrix file download
Gene information file download
Sample information file download
Colors file download



Last updated in September, 2019